Analysis-specific publication narratives — analysis-publication • popgenVCF

Generate methods text, figure legends, citation keys, and a BibTeX library from canonical popgenVCF analysis results embedded in a reproducible project.

Usage

publication_analysis_citations(kind, result = NULL)

publication_analysis_narratives(project)

write_publication_bibliography(narratives, path)

Arguments

kind: Analysis kind such as pca, ibs, fst, or ancestry.
result: Optional canonical analysis result.
project: A validated PopgenVCFProject.
narratives: The table returned by publication_analysis_narratives().
path: Destination BibTeX file.

Value

publication_analysis_citations() returns citation keys. publication_analysis_narratives() returns a data table with one row per available canonical analysis. write_publication_bibliography() returns the normalized path invisibly.

Details

Narratives are generated only from fields present in canonical results. Missing optional fields are omitted rather than inferred. IBS-derived distance is kept distinct from population-level FST, DAPC is not described as ancestry, and model-based ancestry language is reserved for ancestry backend results.