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Compute deterministic classical MDS coordinates from an IBS distance matrix

Source: R/ibs_publication.R
compute_ibs_mds.Rd

Compute deterministic classical MDS coordinates from an IBS distance matrix

Usage

compute_ibs_mds(distance, k = 2L, sample_ids = NULL)

Arguments

distance

A symmetric sample-by-sample distance matrix with zero diagonal.

k

Number of MDS axes to retain.

sample_ids

Optional sample identifiers. Defaults to matrix row names.

Value

A list containing `coordinates`, `eigenvalues`, and `goodness_of_fit`.