Write publication-ready IBS and MDS artifacts
Source:R/ibs_publication.R
write_ibs_publication_artifacts.RdWrite publication-ready IBS and MDS artifacts
Usage
write_ibs_publication_artifacts(
similarity,
distance,
metadata = NULL,
output_dir,
k = 2L,
palette = NULL,
module = "ibs"
)Arguments
- similarity
Symmetric IBS similarity matrix.
- distance
Symmetric IBS distance matrix.
- metadata
Optional data frame containing `sample_id` (or `sample`) and `population`.
- output_dir
Analysis output directory.
- k
Number of MDS axes to retain.
- palette
Optional named population colour vector.
- module
Artifact module name.